PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10613-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 269aa    MW: 29901 Da    PI: 10.2584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10613-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.7e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ ++ ++G g W+tI +          R+  ++k++w++
  TRIUR3_10613-P1  5 KQKWTAEEEAALKAGIGKHGAGKWRTILKDPEfsnilRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.784161IPR017930Myb domain
SuperFamilySSF466893.07E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-13456IPR009057Homeodomain-like
SMARTSM007172.9E-7459IPR001005SANT/Myb domain
PfamPF002493.6E-7556IPR001005SANT/Myb domain
CDDcd116602.54E-19657No hitNo description
PROSITE profilePS5150421.532124195IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.6E-6125190IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.03E-13125199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.5E-14129197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.2E-8132188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRYRSNVDLK DKWRNMNVTV  60
NASGTRDKVR TTTTTTPTAK KPRSAPKQEN HPTSITTITS DGDDDVVDVK PIIKPIVTFT  120
TGSGNKSLSR LENIILEAVK TLNEPTGSYK TAVANYIEEQ YWPPADFDHV LSAKLNELTS  180
SGKLMKVNRK YRIAPSSSFL EGRSSKMLLL DDIKKEPTKV EKVERDGFTA HTKSQLTFCW  240
FCTLTSRHLN ANHSRLTHLV GPASASAFL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2495640.0AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237024.11e-131PREDICTED: single myb histone 5-like
SwissprotC0HIA35e-97SMH6_MAIZE; Single myb histone 6
TrEMBLM8A7Z40.0M8A7Z4_TRIUA; Telomeric repeat-binding factor 2
STRINGMLOC_10278.11e-143(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-55telomere repeat binding factor 1